Transcript: lnc-DGCR6-6:29

Basic information

LNCipedia transcript ID: lnc-DGCR6-6:29 
LNCipedia gene ID: lnc-DGCR6-6
RefSeq ID: NR_026651
Location (hg38): chr22:19022624-19023550
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 927 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT083369; NR_026651; NR_026651.1
Alternative gene names: NCRNA00037; LINC00037; DGCR10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.4696 non-coding 
CPAT coding probability 4.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DGCR6-6:29 no no no no

Available literature

  1. Ni (2018), Role of DiGeorge syndrome critical region gene 9, a long noncoding RNA, in gastric cancer., Onco Targets Ther
  2. Huang (2016), Down-Regulation of LncRNA DGCR5 Correlates with Poor Prognosis in Hepatocellular Carcinoma., Cell. Physiol. Biochem.
  3. Gong (1996), A transcription map of the DiGeorge and velo-cardio-facial syndrome minimal critical region on 22q11., Hum. Mol. Genet.
  4. Sutherland (1996), Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSSK2-7:1
4.0 lnc-TSSK2-7:1
4.1 DGCR5:30
5.0 DGCR5:30
5.1 lnc-SERPIND1-41:29
5.2 lnc-DGCR6-6:29