Transcript: lnc-DERL1-5:2

Basic information

LNCipedia transcript ID: lnc-DERL1-5:2 
LNCipedia gene ID: lnc-DERL1-5
Location (hg38): chr8:122692222-122692545
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 324 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT128494
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DERL1-5:2 no no no no

Available literature

  1. Ho (2015), Targeting non-coding RNAs with the CRISPR/Cas9 system in human cell lines., Nucleic Acids Res.
  2. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  3. Kraus (2015), Identification of Stably Expressed lncRNAs as Valid Endogenous Controls for Profiling of Human Glioma., J Cancer
  4. Shen (2015), Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival., Cancers (Basel)
  5. Pagano (2007), New small nuclear RNA gene-like transcriptional units as sources of regulatory transcripts., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DERL1-3:2
4.0 lnc-DERL1-3:2
4.1 lnc-DERL1-3:2
5.0 lnc-DERL1-3:2
5.1 lnc-WASHC5-48:2
5.2 lnc-DERL1-5:2