Transcript: lnc-DENND3-4:6

Basic information

LNCipedia transcript ID: lnc-DENND3-4:6 
LNCipedia gene ID: lnc-DENND3-4
Ensembl Gene ID: ENSG00000254019
Ensembl Transcript ID: ENST00000518520
Location (hg38): chr8:141254565-141256817
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 584 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518520.1
Alternative gene names: ENSG00000254019.1; RP11-10J21.3; AC011676.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -205.3606 non-coding 
CPAT coding probability 53.67% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DENND3-4:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-10J21.3.1-4:1
4.1 lnc-RP11-10J21.3.1-4:1
5.0 lnc-RP11-10J21.3.1-4:1
5.1 lnc-GPT-93:1
5.2 lnc-DENND3-4:6