Transcript: lnc-DENND1A-3:2

Basic information

LNCipedia transcript ID: lnc-DENND1A-3:2 
LNCipedia gene ID: lnc-DENND1A-3
Location (hg38): chr9:124007675-124009237
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 589 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000453529
Alternative gene names: ENSG00000236668; RP11-85O21.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -411.8916 non-coding 
CPAT coding probability 5.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DENND1A-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DENND1A-3:1
3.1 lnc-DENND1A-3:2
4.0 lnc-DENND1A-3:2
4.1 lnc-DENND1A-3:2
5.0 lnc-DENND1A-3:2
5.1 lnc-ZBTB6-25:2
5.2 lnc-DENND1A-3:2