Transcript: lnc-DEFB136-2:1

Basic information

LNCipedia transcript ID: lnc-DEFB136-2:1 
LNCipedia gene ID: lnc-DEFB136-2
Ensembl Gene ID: ENSG00000269899
Ensembl Transcript ID: ENST00000602711
Location (hg38): chr8:11846154-11846391
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 238 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT125094; ENST00000602711.1
Alternative gene names: ENSG00000269899.1; RP11-589N15.2; AC025857.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -198.7992 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DEFB136-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-297N6.4.1-2:1
4.0 lnc-RP11-297N6.4.1-2:1
4.1 lnc-RP11-297N6.4.1-2:1
5.0 lnc-RP11-297N6.4.1-2:1
5.1 lnc-PINX1-29:1
5.2 lnc-DEFB136-2:1