Transcript: lnc-DDX27-4:6

Basic information

LNCipedia transcript ID: lnc-DDX27-4:6 
LNCipedia gene ID: lnc-DDX27-4
Location (hg38): chr20:49318515-49341393
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1447 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000053477.1|MICT00000219484.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 46.3943 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DDX27-4:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-DDX27-4:6
5.0 lnc-DDX27-4:6
5.1 lnc-SNAI1-28:5
5.2 lnc-DDX27-4:6