Transcript: lnc-DDX10-1:3

Basic information

LNCipedia transcript ID: lnc-DDX10-1:3 
LNCipedia gene ID: lnc-DDX10-1
Ensembl Gene ID: ENSG00000203334
Ensembl Transcript ID: ENST00000366160
Location (hg38): chr11:108957718-108959796
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2076 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000366160.3
Alternative gene names: ENSG00000203334.4; RP11-25I9.3; AP003027.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -120.7478 non-coding 
CPAT coding probability 4.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DDX10-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-DDX10-1:3
4.1 lnc-DDX10-1:3
5.0 lnc-DDX10-1:3
5.1 lnc-ZC3H12C-8:3
5.2 lnc-DDX10-1:3