Transcript: lnc-DCAF17-2:1

Basic information

LNCipedia transcript ID: lnc-DCAF17-2:1 
LNCipedia gene ID: lnc-DCAF17-2
Location (hg38): chr2:171311266-171313841
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2258 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000514012; TCONS_00003048; NONHSAT075451
Alternative gene names: ENSG00000250738; XLOC_001751; linc-DCAF17-1; AC007739.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.2858 non-coding 
CPAT coding probability 79.62% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DCAF17-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCAF17-2:1
3.1 lnc-DCAF17-2:1
4.0 lnc-DCAF17-2:1
4.1 lnc-DCAF17-2:1
5.0 lnc-DCAF17-2:1
5.1 lnc-UBR3-16:1
5.2 lnc-DCAF17-2:1