Transcript: lnc-DAZ1-166:2

Basic information

LNCipedia transcript ID: lnc-DAZ1-166:2 
LNCipedia gene ID: lnc-DAZ1-166
Location (hg38): chrY:23541409-23546896
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 392 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000458444.1; AC009947.4-001; OTTHUMT00000102479.1; NONHSAT147781
Alternative gene names: ENSG00000197955.4; AC009947.4; OTTHUMG00000044058.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.3767 non-coding 
CPAT coding probability 22.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DAZ1-166:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRYP3-1:1
4.0 lnc-PRYP3-1:1
4.1 lnc-PRYP3-1:1
5.0 lnc-PRYP3-1:1
5.1 lnc-DAZ1-4:2
5.2 lnc-DAZ1-166:2