Transcript: lnc-DACT2-1:1

Basic information

LNCipedia transcript ID: lnc-DACT2-1:1 
LNCipedia gene ID: lnc-DACT2-1
Ensembl Gene ID: ENSG00000237987
Ensembl Transcript ID: ENST00000424343
RefSeq ID: NR_134590
Location (hg38): chr6:168225279-168226517
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 455 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011618; ENST00000424343; ENST00000424343.1; RP11-503C24.2-001; OTTHUMT00000043188.1; NONHSAT116141; NR_134590.1
Alternative gene names: XLOC_005928; linc-FRMD1-2; ENSG00000237987; RP11-503C24.2; ENSG00000237987.1; OTTHUMG00000016041.1; AL606970.4; LOC105378137


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.8254 non-coding 
CPAT coding probability 2.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DACT2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DACT2-1:1
3.1 lnc-DACT2-1:1
4.0 lnc-DACT2-1:1
4.1 lnc-DACT2-1:1
5.0 lnc-DACT2-1:1
5.1 lnc-PRKN-69:1
5.2 lnc-DACT2-1:1