Transcript: lnc-CYSTM1-1:2

Basic information

LNCipedia transcript ID: lnc-CYSTM1-1:2 
LNCipedia gene ID: lnc-CYSTM1-1
Ensembl Gene ID: ENSG00000254363
Ensembl Transcript ID: ENST00000607850
Location (hg38): chr5:140161953-140173051
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5951 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009260; NONHSAT104160; ENST00000607850.1
Alternative gene names: XLOC_004577; linc-C5orf32-1; ENSG00000254363.2; CTB-131B5.5; ENSG00000254363.6; AC011379.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.3168 non-coding 
CPAT coding probability 2.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYSTM1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf32-1:2
3.1 lnc-C5orf32-1:2
4.0 lnc-C5orf32-1:2
4.1 lnc-C5orf32-1:2
5.0 lnc-C5orf32-1:2
5.1 lnc-EIF4EBP3-17:2
5.2 lnc-CYSTM1-1:2