Transcript: lnc-CYR61-3:11

Basic information

LNCipedia transcript ID: lnc-CYR61-3:11 
LNCipedia gene ID: lnc-CYR61-3
Location (hg38): chr1:85276622-85448138
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 870 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000223653.1|FTMT20300107547.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -79.5279 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYR61-3:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CYR61-3:11
5.0 lnc-CYR61-3:11
5.1 lnc-SAMD13-18:9
5.2 lnc-CYR61-3:11