Transcript: lnc-CYR61-3:1

Basic information

LNCipedia transcript ID: lnc-CYR61-3:1 
LNCipedia gene ID: lnc-CYR61-3
Ensembl Gene ID: ENSG00000223653
Ensembl Transcript ID: ENST00000427819
Location (hg38): chr1:85276715-85399963
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1950 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427819; ENST00000427819.1; RP11-131L23.1-001; OTTHUMT00000029197.1; NONHSAT004242; ENST00000427819.5
Alternative gene names: ENSG00000223653; RP11-131L23.1; ENSG00000223653.1; OTTHUMG00000010579.1; ENSG00000223653.5; AL078459.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.4072 non-coding 
CPAT coding probability 3.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYR61-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR63-3:1
3.1 lnc-CYR61-3:1
4.0 lnc-CYR61-3:1
4.1 lnc-CYR61-3:1
5.0 lnc-CYR61-3:1
5.1 lnc-SAMD13-18:10
5.2 lnc-CYR61-3:1