Transcript: lnc-CYP7B1-6:4

Basic information

LNCipedia transcript ID: lnc-CYP7B1-6:4 
LNCipedia gene ID: lnc-CYP7B1-6
Ensembl Gene ID: ENSG00000253554
Ensembl Transcript ID: ENST00000520365
Location (hg38): chr8:64151106-64240282
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 569 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520365.1; RP11-32K4.1-003; OTTHUMT00000378632.1; NONHSAT126953
Alternative gene names: ENSG00000253554.1; RP11-32K4.1; OTTHUMG00000164358.2; ENSG00000253554.5; AC022639.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 42.8862 non-coding 
CPAT coding probability 1.93% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.151515152
orfFrame7.123849131
seqAAMPHPALARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGSSGNLFSL

In stringent set: no

Locus conservation

Locus conservation?
lnc-CYP7B1-6:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYP7B1-6:4
4.0 lnc-CYP7B1-6:4
4.1 lnc-CYP7B1-6:4
5.0 lnc-CYP7B1-6:4
5.1 lnc-CPA6-67:7
5.2 lnc-CYP7B1-6:4