Transcript: lnc-CYP7A1-1:6

Basic information

LNCipedia transcript ID: lnc-CYP7A1-1:6 
LNCipedia gene ID: lnc-CYP7A1-1
Ensembl Gene ID: ENSG00000253281
Ensembl Transcript ID: ENST00000523886
Location (hg38): chr8:58259731-58260753
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 523 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523886; ENST00000523886.1; RP11-716D16.1-004; OTTHUMT00000378099.1; NONHSAT126781
Alternative gene names: ENSG00000253281; RP11-716D16.1; ENSG00000253281.1; OTTHUMG00000164285.1; ENSG00000253281.2; ENSG00000253281.6; AC092819.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.0161 non-coding 
CPAT coding probability 5.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYP7A1-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYP7A1-1:6
3.1 lnc-CYP7A1-1:6
4.0 lnc-CYP7A1-1:6
4.1 lnc-CYP7A1-1:6
5.0 lnc-CYP7A1-1:6
5.1 lnc-IMPAD1-24:9
5.2 lnc-CYP7A1-1:6