Transcript: lnc-CYP4F22-3:3

Basic information

LNCipedia transcript ID: lnc-CYP4F22-3:3 
LNCipedia gene ID: lnc-CYP4F22-3
Ensembl Gene ID: ENSG00000268189
Ensembl Transcript ID: ENST00000597164
Location (hg38): chr19:15379312-15381194
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 237 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000597164.2
Alternative gene names: ENSG00000268189.2; AC005785.2; AC005785.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -350.0043 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYP4F22-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYP4F22-3:3
4.0 lnc-CYP4F22-3:3
4.1 lnc-CYP4F22-3:3
5.0 lnc-CYP4F22-3:3
5.1 lnc-MAP1S-61:3
5.2 lnc-CYP4F22-3:3