Transcript: lnc-CXorf49-2:2

Basic information

LNCipedia transcript ID: lnc-CXorf49-2:2 
LNCipedia gene ID: lnc-CXorf49-2
Location (hg38): chrX:71714371-71716387
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 532 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000452468; ENST00000452468.1; CXorf49-001; OTTHUMT00000058911.1; NONHSAT137477
Alternative gene names: ENSG00000215115; CXorf49; ENSG00000215115.5; OTTHUMG00000022702.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.4322 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXorf49-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXCR3-2:2
3.1 lnc-CXCR3-2:2
4.0 lnc-CXCR3-2:2
4.1 lnc-CXCR3-2:2
5.0 lnc-CXCR3-2:2
5.1 lnc-ZMYM3-26:2
5.2 lnc-CXorf49-2:2