Transcript: lnc-CXorf36-46:1

Basic information

LNCipedia transcript ID: lnc-CXorf36-46:1 
LNCipedia gene ID: lnc-CXorf36-46
Location (hg38): chrX:45764524-45851532
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5706 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231566.1|FTMT28900010414.1
Alternative gene names: Lnc-Ang362


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -143.2744 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXorf36-46:1 no no no no

Available literature

  1. Wang (2018), Long non-coding RNA expression profiles reveals AK098783 is a biomarker to predict poor prognosis in patients with colorectal cancer., Jpn. J. Clin. Oncol.
  2. Leung (2013), Novel long noncoding RNAs are regulated by angiotensin II in vascular smooth muscle cells., Circ. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MIR222HG:12
5.0 MIR222HG:12
5.1 lnc-PCSK1N-46:1
5.2 lnc-CXorf36-46:1