Transcript: lnc-CXCL2-3:1

Basic information

LNCipedia transcript ID: lnc-CXCL2-3:1 
LNCipedia gene ID: lnc-CXCL2-3
Ensembl Gene ID: ENSG00000269559
Ensembl Transcript ID: ENST00000600169
Location (hg38): chr4:74156511-74158373
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1863 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000600169.2
Alternative gene names: ENSG00000269559.2; RP11-629B11.5; AC093677.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.6458 non-coding 
CPAT coding probability 57.19% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CXCL2-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CXCL2-3:1
4.1 lnc-CXCL2-3:1
5.0 lnc-CXCL2-3:1
5.1 lnc-CXCL11-29:1
5.2 lnc-CXCL2-3:1