Transcript: lnc-CXCL16-4:2

Basic information

LNCipedia transcript ID: lnc-CXCL16-4:2 
LNCipedia gene ID: lnc-CXCL16-4
Location (hg38): chr17:4694693-4700927
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 6235 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000032848.1|ENCT00000180139.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.1565 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXCL16-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CXCL16-4:2
5.0 lnc-CXCL16-4:2
5.1 lnc-PHF23-59:2
5.2 lnc-CXCL16-4:2