Transcript: lnc-CTXND1-5:1

Basic information

LNCipedia transcript ID: lnc-CTXND1-5:1 
LNCipedia gene ID: lnc-CTXND1-5
Ensembl Gene ID: ENSG00000259175
Ensembl Transcript ID: ENST00000558208
RefSeq ID: NR_120363
Location (hg38): chr15:80554609-80562944
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2520 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000558208.1; RP11-379K22.2-001; OTTHUMT00000417158.1; NONHSAT047706; NR_120363.1
Alternative gene names: ENSG00000259175.1; RP11-379K22.2; OTTHUMG00000172165.1; AC108451.1; LOC101929586


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.3175 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTXND1-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-210M15.2.1-5:1
4.0 lnc-RP11-210M15.2.1-5:1
4.1 lnc-RP11-210M15.2.1-5:1
5.0 lnc-RP11-210M15.2.1-5:1
5.1 lnc-CHRNA3-41:1
5.2 lnc-CTXND1-5:1