Transcript: lnc-CTXN3-1:1

Basic information

LNCipedia transcript ID: lnc-CTXN3-1:1 
LNCipedia gene ID: lnc-CTXN3-1
Location (hg38): chr5:127739538-127740287
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 519 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000506670; ENST00000506670.1; CTC-228N24.1-002; OTTHUMT00000372465.1; NONHSAT103630
Alternative gene names: ENSG00000230561; CTC-228N24.1; ENSG00000230561.3; OTTHUMG00000163284.3; LINC01183


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.4097 non-coding 
CPAT coding probability 9.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTXN3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTXN3-1:1
3.1 lnc-CTXN3-1:1
4.0 lnc-CTXN3-1:1
4.1 lnc-CTXN3-1:1
5.0 lnc-CTXN3-1:1
5.1 lnc-PDLIM4-101:1
5.2 lnc-CTXN3-1:1