Transcript: lnc-CTU2-5:2

Basic information

LNCipedia transcript ID: lnc-CTU2-5:2 
LNCipedia gene ID: lnc-CTU2-5
Ensembl Gene ID: ENSG00000182376
Ensembl Transcript ID: ENST00000567588
Location (hg38): chr16:88742821-88745464
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1900 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567588.1; RP5-1142A6.8-001; OTTHUMT00000423099.1
Alternative gene names: ENSG00000182376.2; RP5-1142A6.8; OTTHUMG00000173435.1; AC138028.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.9198 non-coding 
CPAT coding probability 77.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CTU2-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTU2-5:2
4.0 lnc-CTU2-5:2
4.1 lnc-CTU2-5:2
5.0 lnc-CTU2-5:2
5.1 lnc-SPG7-45:2
5.2 lnc-CTU2-5:2