Transcript: lnc-CTTNBP2-3:12

Basic information

LNCipedia transcript ID: lnc-CTTNBP2-3:12 
LNCipedia gene ID: lnc-CTTNBP2-3
Ensembl Gene ID: ENSG00000234826
Ensembl Transcript ID: ENST00000427030
Location (hg38): chr7:117998858-118004045
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 435 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013241; ENST00000427030; ENST00000427030.1; AC003084.2-001; OTTHUMT00000316690.1; NONHSAT122954
Alternative gene names: XLOC_006577; linc-CTTNBP2-3; ENSG00000234826; AC003084.2; ENSG00000234826.1; OTTHUMG00000150172.1; AC003084.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.5533 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTTNBP2-3:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTTNBP2-1:1
3.1 lnc-CTTNBP2-2:1
4.0 lnc-CTTNBP2-2:1
4.1 lnc-CTTNBP2-3:12
5.0 lnc-CTTNBP2-3:12
5.1 lnc-TFEC-31:12
5.2 lnc-CTTNBP2-3:12