Transcript: lnc-CTSV-5:7

Basic information

LNCipedia transcript ID: lnc-CTSV-5:7 
LNCipedia gene ID: lnc-CTSV-5
Location (hg38): chr9:97155893-97221256
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3676 bp
Exons: 16
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000354752.4; ANKRD18CP-001; OTTHUMT00000053306.1
Alternative gene names: ENSG00000159712.9; ANKRD18CP; OTTHUMG00000020318.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 112.0864 coding 
CPAT coding probability 99.95% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CTSV-5:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTSL2-4:1
4.0 lnc-CTSL2-5:4
4.1 lnc-CTSL2-5:4
5.0 lnc-CTSL2-5:4
5.1 lnc-FANCC-47:7
5.2 lnc-CTSV-5:7