Transcript: lnc-CTSV-5:5

Basic information

LNCipedia transcript ID: lnc-CTSV-5:5 
LNCipedia gene ID: lnc-CTSV-5
Ensembl Gene ID: ENSG00000203279
Ensembl Transcript ID: ENST00000607322
Location (hg38): chr9:97200475-97238700
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 484 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607322.1
Alternative gene names: ENSG00000203279.3; RP11-498P14.5; AL590705.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.8457 non-coding 
CPAT coding probability 5.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTSV-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTSL2-5:2
4.0 lnc-CTSL2-5:2
4.1 lnc-CTSL2-5:2
5.0 lnc-CTSL2-5:2
5.1 lnc-FANCC-47:5
5.2 lnc-CTSV-5:5