Transcript: lnc-CSRNP3-11:1

Basic information

LNCipedia transcript ID: lnc-CSRNP3-11:1 
LNCipedia gene ID: lnc-CSRNP3-11
Location (hg38): chr2:166075289-166081741
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 299 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003929; NONHSAT075278
Alternative gene names: XLOC_001741; linc-XIRP2-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.0695 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSRNP3-11:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSRNP3-3:1
3.1 lnc-CSRNP3-4:1
4.0 TTC21B-AS1:24
4.1 TTC21B-AS1:24
5.0 TTC21B-AS1:24
5.1 lnc-PHOSPHO2-26:1
5.2 lnc-CSRNP3-11:1