Transcript: lnc-CSNK1G3-2:1

Basic information

LNCipedia transcript ID: lnc-CSNK1G3-2:1 
LNCipedia gene ID: lnc-CSNK1G3-2
Ensembl Gene ID: ENSG00000249112
Ensembl Transcript ID: ENST00000515092
Location (hg38): chr5:124707827-124710737
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 832 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515092.1; RP11-43D2.2-001; OTTHUMT00000371298.2; NONHSAT103528
Alternative gene names: ENSG00000249112.1; RP11-43D2.2; OTTHUMG00000162997.2; AC112196.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.6453 non-coding 
CPAT coding probability 4.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK1G3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-43D2.2.1-1:1
4.0 lnc-RP11-43D2.2.1-1:1
4.1 lnc-RP11-43D2.2.1-1:1
5.0 lnc-RP11-43D2.2.1-1:1
5.1 lnc-PDLIM4-132:1
5.2 lnc-CSNK1G3-2:1