Transcript: lnc-CSMD1-7:2

Basic information

LNCipedia transcript ID: lnc-CSMD1-7:2 
LNCipedia gene ID: lnc-CSMD1-7
Ensembl Gene ID: ENSG00000253764
Ensembl Transcript ID: ENST00000517676
Location (hg38): chr8:1972570-1973610
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 557 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517676.1; RP11-439C15.4-002; OTTHUMT00000374599.1
Alternative gene names: ENSG00000253764.1; RP11-439C15.4; OTTHUMG00000163628.1; AC019257.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.1284 non-coding 
CPAT coding probability 6.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSMD1-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CSMD1-7:2
4.0 lnc-CSMD1-7:2
4.1 lnc-CSMD1-7:2
5.0 lnc-CSMD1-7:2
5.1 lnc-DEFA1B-68:7
5.2 lnc-CSMD1-7:2