Transcript: lnc-CSMD1-6:2

Basic information

LNCipedia transcript ID: lnc-CSMD1-6:2 
LNCipedia gene ID: lnc-CSMD1-6
Location (hg38): chr8:5659757-5664763
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 290 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014914; NONHSAT124760
Alternative gene names: XLOC_006981; linc-CSMD1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -674.5567 non-coding 
CPAT coding probability 3.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSMD1-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSMD1-6:2
3.1 lnc-CSMD1-6:2
4.0 lnc-CSMD1-6:2
4.1 lnc-CSMD1-6:2
5.0 lnc-CSMD1-6:2
5.1 lnc-DEFA1B-42:2
5.2 lnc-CSMD1-6:2