Transcript: lnc-CRYBA4-52:79

Basic information

LNCipedia transcript ID: lnc-CRYBA4-52:79 
HGNC Gene Symbol: lnc-CRYBA4-52    
HGNC Full Gene Name: MIAT neighbor
Ensembl Gene ID: ENSG00000244625
Ensembl Transcript ID: ENST00000446336
Location (hg38): chr22:26717252-26742838
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 459 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446336; TCONS_00029394; ENST00000446336.1; CTA-211A9.5-004; OTTHUMT00000320771.1; NONHSAT084546
Alternative gene names: ENSG00000244625; XLOC_014192; linc-HSCB-11; CTA-211A9.5; ENSG00000244625.1; OTTHUMG00000150981.2; ENSG00000244625.5; MIATNB;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.9486 non-coding 
CPAT coding probability 5.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRYBA4-52:79 no no no no

Available literature

  1. Briese (2016), Whole transcriptome profiling reveals the RNA content of motor axons., Nucleic Acids Res.
  2. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  3. Liao (2016), LncRNA MIAT: Myocardial infarction associated and more., Gene
  4. Rosa (2016), Long Noncoding RNA Regulation of Pluripotency., Stem Cells Int
  5. Cabili (2015), Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution., Genome Biol.
  6. Fiedler (2015), Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization., J. Am. Coll. Cardiol.
  7. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
  8. Rao (2015), Genetic variants in long non-coding RNA MIAT contribute to risk of paranoid schizophrenia in a Chinese Han population., Schizophr. Res.
  9. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  10. Yan (2015), lncRNA-MIAT regulates microvascular dysfunction by functioning as a competing endogenous RNA., Circ. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRYBA4-1:41
3.1 lnc-CRYBA4-1:41
4.0 lnc-CRYBA4-1:41
4.1 LINC01422:114
5.0 LINC01422:114
5.1 lnc-CABIN1-52:79
5.2 lnc-CRYBA4-52:79

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