Transcript: lnc-COX6A1-1:1

Basic information

LNCipedia transcript ID: lnc-COX6A1-1:1 
LNCipedia gene ID: lnc-COX6A1-1
Ensembl Gene ID: ENSG00000256695
Ensembl Transcript ID: ENST00000536933
Location (hg38): chr12:120389546-120395994
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 365 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536933; ENST00000536933.1; RP1-166H1.2-001; OTTHUMT00000401995.1; NONHSAT031170
Alternative gene names: ENSG00000256695; RP1-166H1.2; ENSG00000256695.1; OTTHUMG00000169024.1; AC003982.2; AC003982.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -235.522 non-coding 
CPAT coding probability 5.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX6A1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COX6A1-1:1
3.1 lnc-COX6A1-1:1
4.0 lnc-COX6A1-1:1
4.1 lnc-COX6A1-1:1
5.0 lnc-COX6A1-1:1
5.1 lnc-COX6A1-1:1
5.2 lnc-COX6A1-1:1