Transcript: lnc-COLEC10-1:16

Basic information

LNCipedia transcript ID: lnc-COLEC10-1:16 
LNCipedia gene ID: lnc-COLEC10-1
Ensembl Gene ID: ENSG00000225885
Ensembl Transcript ID: ENST00000430457
Location (hg38): chr8:118291208-118400605
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 676 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT128409; ENST00000430457.1
Alternative gene names: ENSG00000225885.6; AC023590.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.3669 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COLEC10-1:16 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC023590.1.1-1:3
4.0 lnc-AC023590.1.1-1:3
4.1 lnc-AC023590.1.1-1:3
5.0 lnc-AC023590.1.1-1:3
5.1 lnc-COLEC10-1:11
5.2 lnc-COLEC10-1:16