Transcript: lnc-COL28A1-1:5

Basic information

LNCipedia transcript ID: lnc-COL28A1-1:5 
LNCipedia gene ID: lnc-COL28A1-1
Location (hg38): chr7:7550852-7564302
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1545 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013690; NONHSAT119114
Alternative gene names: XLOC_006350; linc-COL28A1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.6273 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL28A1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL28A1-1:5
3.1 lnc-COL28A1-1:5
4.0 lnc-COL28A1-1:5
4.1 lnc-COL28A1-1:5
5.0 lnc-COL28A1-1:5
5.1 lnc-RNF216-33:17
5.2 lnc-COL28A1-1:5