Transcript: lnc-COL28A1-1:16

Basic information

LNCipedia transcript ID: lnc-COL28A1-1:16 
LNCipedia gene ID: lnc-COL28A1-1
Location (hg38): chr7:7549918-7567012
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4230 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272894.1|MICT00000318418.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 35.3336 non-coding 
CPAT coding probability 11.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL28A1-1:16 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-COL28A1-1:16
5.0 lnc-COL28A1-1:16
5.1 lnc-RNF216-33:2
5.2 lnc-COL28A1-1:16