Transcript: lnc-COL20A1-5:3

Basic information

LNCipedia transcript ID: lnc-COL20A1-5:3 
LNCipedia gene ID: lnc-COL20A1-5
Ensembl Gene ID: ENSG00000280936
Ensembl Transcript ID: ENST00000629794
Location (hg38): chr20:63422269-63424555
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 519 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000629794.1
Alternative gene names: ENSG00000280936.1; RP11-358D14.3; AL353658.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -238.5422 non-coding 
CPAT coding probability 8.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL20A1-5:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-COL20A1-5:3
4.1 lnc-COL20A1-5:3
5.0 lnc-COL20A1-5:3
5.1 lnc-GNAS-68:1
5.2 lnc-COL20A1-5:3