Transcript: lnc-COL1A1-1:2

Basic information

LNCipedia transcript ID: lnc-COL1A1-1:2 
LNCipedia gene ID: lnc-COL1A1-1
Ensembl Gene ID: ENSG00000263176
Ensembl Transcript ID: ENST00000577175
Location (hg38): chr17:50212933-50215357
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577175.1; RP11-893F2.15-001; OTTHUMT00000440092.1; NONHSAT054620
Alternative gene names: ENSG00000263176.1; RP11-893F2.15; OTTHUMG00000177978.1; AC015909.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.5289 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL1A1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL1A1-1:2
4.0 lnc-COL1A1-1:2
4.1 lnc-COL1A1-1:2
5.0 lnc-COL1A1-1:2
5.1 lnc-LRRC59-2:2
5.2 lnc-COL1A1-1:2