Transcript: lnc-COL15A1-1:2

Basic information

LNCipedia transcript ID: lnc-COL15A1-1:2 
LNCipedia gene ID: lnc-COL15A1-1
Location (hg38): chr9:98911171-98917668
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1522 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016660; NONHSAT133628
Alternative gene names: XLOC_007486; linc-COL15A1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.9939 non-coding 
CPAT coding probability 3.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL15A1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL15A1-1:2
3.1 lnc-COL15A1-1:2
4.0 lnc-COL15A1-1:2
4.1 lnc-COL15A1-1:2
5.0 lnc-COL15A1-1:2
5.1 lnc-FAM120A-122:3
5.2 lnc-COL15A1-1:2