Transcript: lnc-COG5-2:1

Basic information

LNCipedia transcript ID: lnc-COG5-2:1 
LNCipedia gene ID: lnc-COG5-2
Ensembl Gene ID: ENSG00000243193
Ensembl Transcript ID: ENST00000494849
Location (hg38): chr7:107077226-107133733
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 342 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000494849.1; CTA-360L10.1-001; OTTHUMT00000349311.1; NONHSAT122670; ENST00000494849.3
Alternative gene names: ENSG00000243193.1; CTA-360L10.1; OTTHUMG00000157643.1; ENSG00000243193.2; ENSG00000243193.4; AC006387.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -541.9177 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COG5-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COG5-2:1
4.0 lnc-COG5-2:1
4.1 lnc-COG5-2:1
5.0 lnc-COG5-2:1
5.1 lnc-NRCAM-19:1
5.2 lnc-COG5-2:1