Transcript: lnc-COA6-1:1

Basic information

LNCipedia transcript ID: lnc-COA6-1:1 
LNCipedia gene ID: lnc-COA6-1
Ensembl Gene ID: ENSG00000236358
Ensembl Transcript ID: ENST00000425104
Location (hg38): chr1:234357006-234365828
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 410 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425104.1; RP5-827C21.2-001; OTTHUMT00000092611.1; NONHSAT010278
Alternative gene names: ENSG00000236358.1; RP5-827C21.2; OTTHUMG00000037944.1; AL355472.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.2934 non-coding 
CPAT coding probability 10.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COA6-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf31-1:1
4.0 lnc-C1orf31-1:1
4.1 lnc-C1orf31-1:1
5.0 lnc-C1orf31-1:1
5.1 lnc-KCNK1-9:1
5.2 lnc-COA6-1:1