Transcript: lnc-CNTNAP5-4:1

Basic information

LNCipedia transcript ID: lnc-CNTNAP5-4:1 
LNCipedia gene ID: lnc-CNTNAP5-4
Ensembl Gene ID: ENSG00000237856
Ensembl Transcript ID: ENST00000435441
Location (hg38): chr2:123065321-123067722
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 801 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002998; ENST00000435441; ENST00000435441.1; AC062020.2-001; OTTHUMT00000331145.1; NONHSAT074093
Alternative gene names: XLOC_001654; linc-CNTNAP5-2; ENSG00000237856; AC062020.2; ENSG00000237856.1; OTTHUMG00000153425.1; AC062020.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -209.5024 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNTNAP5-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CNTNAP5-4:1
3.1 lnc-CNTNAP5-4:1
4.0 lnc-CNTNAP5-4:1
4.1 lnc-CNTNAP5-4:1
5.0 lnc-CNTNAP5-4:1
5.1 lnc-TMEM37-44:1
5.2 lnc-CNTNAP5-4:1