Transcript: lnc-CNTNAP4-3:1

Basic information

LNCipedia transcript ID: lnc-CNTNAP4-3:1 
LNCipedia gene ID: lnc-CNTNAP4-3
Location (hg38): chr16:76769316-76773062
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 456 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024472; NONHSAT143786
Alternative gene names: XLOC_011793; linc-MON1B-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.0285 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNTNAP4-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-58C22.1.1-3:1
3.1 lnc-RP11-58C22.1.1-3:1
4.0 lnc-RP11-58C22.1.1-3:1
4.1 lnc-RP11-58C22.1.1-3:1
5.0 lnc-RP11-58C22.1.1-3:1
5.1 lnc-MARVELD3-87:1
5.2 lnc-CNTNAP4-3:1