Transcript: lnc-CNTNAP3-24:1

Basic information

LNCipedia transcript ID: lnc-CNTNAP3-24:1 
LNCipedia gene ID: lnc-CNTNAP3-24
Ensembl Gene ID: ENSG00000284116
Ensembl Transcript ID: ENST00000639363
Location (hg38): chr9:39983793-40106611
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1066 bp
Exons: 4
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000639363.1
Alternative gene names: ENSG00000284116.1; AL772307.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.6353 non-coding 
CPAT coding probability 49.13% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CNTNAP3-24:1 no no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SHB-24:1
5.1 lnc-SHB-24:1
5.2 lnc-CNTNAP3-24:1