Transcript: lnc-CMSS1-3:1

Basic information

LNCipedia transcript ID: lnc-CMSS1-3:1 
LNCipedia gene ID: lnc-CMSS1-3
Location (hg38): chr3:100185824-100194191
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 380 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT090864
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.7773 non-coding 
CPAT coding probability 6.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CMSS1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM30C-1:1
4.0 lnc-TMEM30C-1:1
4.1 lnc-TMEM30C-1:1
5.0 lnc-TMEM30C-1:1
5.1 lnc-CMSS1-2:1
5.2 lnc-CMSS1-3:1