Transcript: lnc-CMSS1-1:6

Basic information

LNCipedia transcript ID: lnc-CMSS1-1:6 
LNCipedia gene ID: lnc-CMSS1-1
Location (hg38): chr3:100179567-100181732
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2166 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000569034.2
Alternative gene names: ENSG00000261533.2; RP11-15N24.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.4377 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CMSS1-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C3orf26-1:3
4.1 lnc-C3orf26-1:3
5.0 lnc-C3orf26-1:3
5.1 lnc-CMSS1-1:3
5.2 lnc-CMSS1-1:6