Transcript: lnc-CMSS1-1:4

Basic information

LNCipedia transcript ID: lnc-CMSS1-1:4 
LNCipedia gene ID: lnc-CMSS1-1
Location (hg38): chr3:100179567-100181730
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2164 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000569034.1; RP11-15N24.4-001; OTTHUMT00000430909.1; NONHSAT090863
Alternative gene names: ENSG00000261533.1; RP11-15N24.4; OTTHUMG00000175730.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.4377 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CMSS1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C3orf26-1:1
4.0 lnc-C3orf26-1:1
4.1 lnc-C3orf26-1:1
5.0 lnc-C3orf26-1:1
5.1 lnc-CMSS1-1:1
5.2 lnc-CMSS1-1:4