Transcript: lnc-CMPK2-9:1

Basic information

LNCipedia transcript ID: lnc-CMPK2-9:1 
LNCipedia gene ID: lnc-CMPK2-9
Ensembl Gene ID: ENSG00000234275
Ensembl Transcript ID: ENST00000425125
Location (hg38): chr2:6312954-6325646
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 579 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003174; ENST00000425125; ENST00000425125.1; AC017053.1-001; OTTHUMT00000322747.1; NONHSAT068839
Alternative gene names: XLOC_001961; linc-RNASEH1-11; ENSG00000234275; AC017053.1; ENSG00000234275.1; OTTHUMG00000151460.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.5186 non-coding 
CPAT coding probability 2.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CMPK2-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-8:1
3.1 lnc-CMPK2-9:1
4.0 lnc-CMPK2-9:1
4.1 lnc-CMPK2-9:1
5.0 lnc-CMPK2-9:1
5.1 lnc-RAD51AP2-159:1
5.2 lnc-CMPK2-9:1