Transcript: lnc-CMPK2-5:66

Basic information

LNCipedia transcript ID: lnc-CMPK2-5:66 
HGNC Gene Symbol: lnc-CMPK2-5    
HGNC Full Gene Name: MIR7515 host gene
Ensembl Gene ID: ENSG00000236172
Ensembl Transcript ID: ENST00000425711
Location (hg38): chr2:6649105-6650310
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 423 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003179; ENST00000425711; ENST00000425711.1; AC097517.2-004; OTTHUMT00000323695.1; NONHSAT068904
Alternative gene names: XLOC_001964; linc-RNASEH1-13; ENSG00000236172; AC097517.2; ENSG00000236172.1; OTTHUMG00000151631.2; ENSG00000236172.2; hsa-mir-7515; ENSG00000236172.6; MIR7515HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -211.7868 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CMPK2-5:66 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-4:7
3.1 lnc-CMPK2-4:7
4.0 lnc-CMPK2-5:66
4.1 lnc-CMPK2-5:66
5.0 lnc-CMPK2-5:66
5.1 lnc-RAD51AP2-155:15
5.2 lnc-CMPK2-5:66