Transcript: lnc-CMPK2-5:3

Basic information

LNCipedia transcript ID: lnc-CMPK2-5:3 
HGNC Gene Symbol: lnc-CMPK2-5    
HGNC Full Gene Name: MIR7515 host gene
Ensembl Gene ID: ENSG00000236172
Ensembl Transcript ID: ENST00000455317
RefSeq ID: NR_110500
Location (hg38): chr2:6626109-6633787
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 294 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00003176; ENST00000455317; ENST00000455317.1; AC097517.1-001; OTTHUMT00000323351.1; NONHSAT068862; NR_110500; ENST00000455317.5; NR_110500.1
Alternative gene names: XLOC_001963; linc-RNASEH1-9; ENSG00000234815; AC097517.1; ENSG00000234815.1; OTTHUMG00000151632.1; ENSG00000236172.2; hsa-mir-7515; ENSG00000236172.6; MIR7515HG; LINC01246


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CMPK2-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-5:3
3.1 lnc-CMPK2-5:3
4.0 lnc-CMPK2-5:3
4.1 lnc-CMPK2-5:3
5.0 lnc-CMPK2-5:3
5.1 lnc-RAD51AP2-155:81
5.2 lnc-CMPK2-5:3