Transcript: lnc-CLVS1-1:2

Basic information

LNCipedia transcript ID: lnc-CLVS1-1:2 
LNCipedia gene ID: lnc-CLVS1-1
Ensembl Gene ID: ENSG00000254777
Ensembl Transcript ID: ENST00000529234
Location (hg38): chr8:60910590-60963425
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529234; ENST00000529234.1; AC022182.1-001; OTTHUMT00000383483.1; NONHSAT126855; ENST00000529234.5
Alternative gene names: ENSG00000254777; AC022182.1; ENSG00000254777.1; OTTHUMG00000165334.1; ENSG00000254777.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.6726 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLVS1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLVS1-1:2
3.1 lnc-CLVS1-1:2
4.0 lnc-CLVS1-1:2
4.1 lnc-CLVS1-1:2
5.0 lnc-CLVS1-1:2
5.1 lnc-SDCBP-41:4
5.2 lnc-CLVS1-1:2